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dataone - R Interface to the 'DataONE' REST API

Provides read and write access to data and metadata from the 'DataONE' network <https://www.dataone.org> of data repositories. Each 'DataONE' repository implements a consistent repository application programming interface. Users call methods in R to access these remote repository functions, such as methods to query the metadata catalog, get access to metadata for particular data packages, and read the data objects from the data repository. Users can also insert and update data objects on repositories that support these methods.

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10.64 score 35 stars 5 dependents 336 scripts 671 downloads

codyn - Community Dynamics Metrics

Univariate and multivariate temporal and spatial diversity indices, rank abundance curves, and community stability measures. The functions implement measures that are either explicitly temporal and include the option to calculate them over multiple replicates, or spatial and include the option to calculate them over multiple time points. Functions fall into five categories: static diversity indices, temporal diversity indices, spatial diversity indices, rank abundance curves, and community stability measures. The diversity indices are temporal and spatial analogs to traditional diversity indices. Specifically, the package includes functions to calculate community richness, evenness and diversity at a given point in space and time. In addition, it contains functions to calculate species turnover, mean rank shifts, and lags in community similarity between two time points. Details of the methods are available in Hallett et al. (2016) <doi:10.1111/2041-210X.12569> and Avolio et al. (2019) <doi:10.1002/ecs2.2881>.

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community-dynamicsecologyspatial-dynamicstemporal-dynamics

9.49 score 37 stars 280 scripts 641 downloads

datapack - A Flexible Container to Transport and Manipulate Data and Associated Resources

Provides a flexible container to transport and manipulate complex sets of data. These data may consist of multiple data files and associated meta data and ancillary files. Individual data objects have associated system level meta data, and data files are linked together using the OAI-ORE standard resource map which describes the relationships between the files. The OAI- ORE standard is described at <https://www.openarchives.org/ore/>. Data packages can be serialized and transported as structured files that have been created following the BagIt specification. The BagIt specification is described at <https://datatracker.ietf.org/doc/html/draft-kunze-bagit-08>.

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7.77 score 41 stars 6 dependents 833 downloads

redland - RDF Library Bindings in R

Provides methods to parse, query and serialize information stored in the Resource Description Framework (RDF). RDF is described at <https://www.w3.org/TR/rdf-primer/>. This package supports RDF by implementing an R interface to the Redland RDF C library, described at <https://librdf.org/docs/api/index.html>. In brief, RDF provides a structured graph consisting of Statements composed of Subject, Predicate, and Object Nodes.

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redland

7.23 score 16 stars 13 dependents 1.9k downloads

redland - RDF Library Bindings in R

Provides methods to parse, query and serialize information stored in the Resource Description Framework (RDF). RDF is described at <https://www.w3.org/TR/rdf-primer/>. This package supports RDF by implementing an R interface to the Redland RDF C library, described at <https://librdf.org/docs/api/index.html>. In brief, RDF provides a structured graph consisting of Statements composed of Subject, Predicate, and Object Nodes.

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redland

5.63 score 13 dependents 117 scripts 1.9k downloads

datamgmt - Data Management Utilities for Curating, Documenting, and Publishing Data

Data management utilities for curating, documenting, and publishing data.

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5.35 score 14 stars 5 scripts

flowers - Flower Plots

Flowers provides functions to generate flower plot graphics.

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2.04 score 2 stars 11 scripts